Journal of Computational Biology via MedWorm.com MedWorm.com provides a medical RSS filtering service. Over 6000 RSS medical sources are combined and output via different filters. This feed contains the latest items from the 'Journal of Computational Biology' source. Fri, 19 Mar 2010 17:20:45 +0100 Multidimensional Fitting for Multivariate Data Analysis http://www.medworm.com/index.php?rid=3297796&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0126%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3297796 Tue, 23 Feb 2010 04:04:00 +0100 3297796 A Double-Layered Mixture Model for the Joint Analysis of DNA Copy Number and Gene Expression Data http://www.medworm.com/index.php?rid=3293948&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0019%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Feb 2010, Vol. 17, No. 2: 121-137. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3293948 Sun, 21 Feb 2010 13:05:38 +0100 3293948 Computing the Stochastic Dynamics of Phosphorylation Networks http://www.medworm.com/index.php?rid=3293949&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0059%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Feb 2010, Vol. 17, No. 2: 189-199. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3293949 Sun, 21 Feb 2010 13:05:35 +0100 3293949 On Algebraic Properties of Extreme Pathways in Metabolic Networks http://www.medworm.com/index.php?rid=3293947&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0020%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Feb 2010, Vol. 17, No. 2: 107-119. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3293947 Sun, 21 Feb 2010 13:05:20 +0100 3293947 Towards Improved Assessment of Functional Similarity in Large-Scale Screens: A Study on Indel Length http://www.medworm.com/index.php?rid=3181781&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0031%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jan 2010, Vol. 17, No. 1: 1-20. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3181781 Mon, 18 Jan 2010 12:53:31 +0100 3181781 Efficient Genome-Wide TagSNP Selection Across Populations via the Linkage Disequilibrium Criterion http://www.medworm.com/index.php?rid=3181782&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2007.0228%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jan 2010, Vol. 17, No. 1: 21-37. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3181782 Mon, 18 Jan 2010 12:53:26 +0100 3181782 Insights into Bacterial Genome Composition through Variable Target GC Content Profiling http://www.medworm.com/index.php?rid=3181786&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0058%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jan 2010, Vol. 17, No. 1: 79-96. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3181786 Mon, 18 Jan 2010 12:53:24 +0100 3181786 Prediction of Extracellular Matrix Proteins Based on Distinctive Sequence and Domain Characteristics http://www.medworm.com/index.php?rid=3181787&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0236%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jan 2010, Vol. 17, No. 1: 97-105. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3181787 Mon, 18 Jan 2010 12:53:22 +0100 3181787 Computing Combinatorial Intervention Strategies and Failure Modes in Signaling Networks http://www.medworm.com/index.php?rid=3181783&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0121%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jan 2010, Vol. 17, No. 1: 39-53. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3181783 Mon, 18 Jan 2010 12:53:20 +0100 3181783 Graphlet Kernels for Prediction of Functional Residues in Protein Structures http://www.medworm.com/index.php?rid=3181784&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0029%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jan 2010, Vol. 17, No. 1: 55-72. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3181784 Mon, 18 Jan 2010 12:53:16 +0100 3181784 GBA Manager: An Online Tool for Querying Low-Complexity Regions in Proteins http://www.medworm.com/index.php?rid=3181785&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0006%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jan 2010, Vol. 17, No. 1: 73-77. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3181785 Mon, 18 Jan 2010 12:53:13 +0100 3181785 Stationary Wavelet Packet Transform and Dependent Laplacian Bivariate Shrinkage Estimator for Array-CGH Data Smoothing http://www.medworm.com/index.php?rid=3178417&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0013%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3178417 Sat, 16 Jan 2010 03:53:20 +0100 3178417 Estimating the Proportion of Equivalently Expressed Genes in Microarray Data Based on Transformed Test Statistics http://www.medworm.com/index.php?rid=3178419&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0060%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3178419 Sat, 16 Jan 2010 03:52:33 +0100 3178419 Reducing the Computational Complexity of Information Theoretic Approaches for Reconstructing Gene Regulatory Networks http://www.medworm.com/index.php?rid=3178418&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0052%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3178418 Sat, 16 Jan 2010 03:49:16 +0100 3178418 Biological Cluster Evaluation for Gene Function Prediction http://www.medworm.com/index.php?rid=3156046&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0129%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3156046 Sat, 09 Jan 2010 00:18:36 +0100 3156046 Use of Wrapper Algorithms Coupled with a Random Forests Classifier for Variable Selection in Large-Scale Genomic Association Studies http://www.medworm.com/index.php?rid=3141898&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0037%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Dec 2009, Vol. 16, No. 12: 1705-1718. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3141898 Mon, 04 Jan 2010 19:49:38 +0100 3141898 A Computation to Integrate the Analysis of Genetic Variations Occurring within Regulatory Elements and Their Possible Effects http://www.medworm.com/index.php?rid=3141900&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0247%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Dec 2009, Vol. 16, No. 12: 1731-1747. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3141900 Mon, 04 Jan 2010 19:49:37 +0100 3141900 United-Residue (UNRES) Langevin Dynamics Simulations of trpzip2 Folding http://www.medworm.com/index.php?rid=3141899&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0070%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Dec 2009, Vol. 16, No. 12: 1719-1730. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3141899 Mon, 04 Jan 2010 19:49:34 +0100 3141899 The Accurate Prediction of Protein Family from Amino Acid Sequence by Measuring Features of Sequence Fragments http://www.medworm.com/index.php?rid=3141896&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0115%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Dec 2009, Vol. 16, No. 12: 1671-1688. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3141896 Mon, 04 Jan 2010 19:49:32 +0100 3141896 A Relational Extension of the Notion of Motifs: Application to the Common 3D Protein Substructures Searching Problem http://www.medworm.com/index.php?rid=3141895&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0019%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Dec 2009, Vol. 16, No. 12: 1635-1660. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3141895 Mon, 04 Jan 2010 19:48:57 +0100 3141895 Tabu Search and Binary Particle Swarm Optimization for Feature Selection Using Microarray Data http://www.medworm.com/index.php?rid=3141897&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2007.0211%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Dec 2009, Vol. 16, No. 12: 1689-1703. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3141897 Mon, 04 Jan 2010 19:48:48 +0100 3141897 Alignment-Free Sequence Comparison (I): Statistics and Power http://www.medworm.com/index.php?rid=3074813&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0198%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3074813 Wed, 09 Dec 2009 16:24:49 +0100 3074813 Alignment of Phylogenetically Unambiguous Indels in Shewanella http://www.medworm.com/index.php?rid=3051606&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0188%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Nov 2009, Vol. 16, No. 11: 1517-1528. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3051606 Thu, 03 Dec 2009 14:03:42 +0100 3051606 Background Adjustment for DNA Microarrays Using a Database of Microarray Experiments http://www.medworm.com/index.php?rid=3051605&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0063%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Nov 2009, Vol. 16, No. 11: 1501-1515. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3051605 Thu, 03 Dec 2009 14:03:09 +0100 3051605 Folding 3-Noncrossing RNA Pseudoknot Structures http://www.medworm.com/index.php?rid=3051608&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0194%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Nov 2009, Vol. 16, No. 11: 1549-1575. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3051608 Thu, 03 Dec 2009 14:02:53 +0100 3051608 Categorizing Host-Dependent RNA Viruses by Principal Component Analysis of Their Codon Usage Preferences http://www.medworm.com/index.php?rid=3051607&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0046%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Nov 2009, Vol. 16, No. 11: 1539-1547. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3051607 Thu, 03 Dec 2009 14:02:28 +0100 3051607 Binding Balls: Fast Detection of Binding Sites Using a Property of Spherical Fourier Transform http://www.medworm.com/index.php?rid=3051609&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0045%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Nov 2009, Vol. 16, No. 11: 1577-1591. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=3051609 Thu, 03 Dec 2009 14:02:08 +0100 3051609 Computation of Perfect DCJ Rearrangement Scenarios with Linear and Circular Chromosomes http://www.medworm.com/index.php?rid=2861918&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0088%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Oct 2009, Vol. 16, No. 10: 1287-1309. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2861918 Mon, 05 Oct 2009 15:51:32 +0100 2861918 Towards Improved Reconstruction of Ancestral Gene Order in Angiosperm Phylogeny http://www.medworm.com/index.php?rid=2861920&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0103%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Oct 2009, Vol. 16, No. 10: 1353-1367. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2861920 Mon, 05 Oct 2009 15:50:44 +0100 2861920 The Birth of New Genes by RNA- and DNA-Mediated Duplication during Mammalian Evolution http://www.medworm.com/index.php?rid=2861922&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0073%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Oct 2009, Vol. 16, No. 10: 1429-1444. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2861922 Mon, 05 Oct 2009 15:49:53 +0100 2861922 Gene Team Tree: A Hierarchical Representation of Gene Teams for All Gap Lengths http://www.medworm.com/index.php?rid=2861921&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0093%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Oct 2009, Vol. 16, No. 10: 1383-1398. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2861921 Mon, 05 Oct 2009 15:48:54 +0100 2861921 DCJ Path Formulation for Genome Transformations which Include Insertions, Deletions, and Duplications http://www.medworm.com/index.php?rid=2861919&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0092%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Oct 2009, Vol. 16, No. 10: 1311-1338. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2861919 Mon, 05 Oct 2009 15:48:53 +0100 2861919 Estimating Mutation Distances from Unaligned Genomes http://www.medworm.com/index.php?rid=2861923&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0106%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Oct 2009, Vol. 16, No. 10: 1487-1500. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2861923 Mon, 05 Oct 2009 15:48:43 +0100 2861923 Sparsity Optimization Method for Multivariate Feature Screening for Gene Expression Analysis http://www.medworm.com/index.php?rid=2818981&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0034%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Sep 2009, Vol. 16, No. 9: 1241-1252. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2818981 Tue, 22 Sep 2009 16:16:54 +0100 2818981 Accurate Stochastic Simulation via the Step Anticipation τ-Leaping (SAL) Algorithm http://www.medworm.com/index.php?rid=2818977&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0249%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Sep 2009, Vol. 16, No. 9: 1195-1208. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2818977 Tue, 22 Sep 2009 16:16:52 +0100 2818977 A Note on the Linear Memory Baum-Welch Algorithm http://www.medworm.com/index.php?rid=2818978&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0178%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Sep 2009, Vol. 16, No. 9: 1209-1210. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2818978 Tue, 22 Sep 2009 16:16:24 +0100 2818978 Mining the Semantics of Genome Super-Blocks to Infer Ancestral Architectures http://www.medworm.com/index.php?rid=2818983&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0046%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Sep 2009, Vol. 16, No. 9: 1267-1284. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2818983 Tue, 22 Sep 2009 16:16:11 +0100 2818983 A New Data Mining Approach for the Detection of Bacterial Promoters Combining Stochastic and Combinatorial Methods http://www.medworm.com/index.php?rid=2818979&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0122%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Sep 2009, Vol. 16, No. 9: 1211-1225. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2818979 Tue, 22 Sep 2009 16:15:57 +0100 2818979 Duplication Mechanism and Disruptions in Flanking Regions Determine the Fate of Mammalian Gene Duplicates http://www.medworm.com/index.php?rid=2818982&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0074%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Sep 2009, Vol. 16, No. 9: 1253-1266. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2818982 Tue, 22 Sep 2009 16:15:52 +0100 2818982 Inference in Signal Transduction Pathways Using EM Algorithm and an Implicit Algorithm: Incomplete Data Case http://www.medworm.com/index.php?rid=2818980&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0129%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Sep 2009, Vol. 16, No. 9: 1227-1240. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2818980 Tue, 22 Sep 2009 16:15:42 +0100 2818980 Computation of Rank and Select Functions on Hierarchical Binary String and Its Application to Genome Mapping Problems for Short-Read DNA Sequences http://www.medworm.com/index.php?rid=2818972&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0146%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2818972 Tue, 22 Sep 2009 16:15:13 +0100 2818972 Survival Prediction and Gene Identification with Penalized Global AUC Maximization http://www.medworm.com/index.php?rid=2818973&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0188%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2818973 Tue, 22 Sep 2009 15:24:13 +0100 2818973 On the Parameterized Complexity of Pooling Design http://www.medworm.com/index.php?rid=2818975&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0224%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2818975 Tue, 22 Sep 2009 14:05:24 +0100 2818975 Parallel GPU Implementation of Iterative PCA Algorithms http://www.medworm.com/index.php?rid=2818974&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0221%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2818974 Tue, 22 Sep 2009 14:05:24 +0100 2818974 BCL::Contact–Low Confidence Fold Recognition Hits Boost Protein Contact Prediction and De Novo Structure Determination http://www.medworm.com/index.php?rid=2818976&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0030%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2818976 Tue, 22 Sep 2009 13:09:06 +0100 2818976 RECOMB–Comparative Genomics Special Issue http://www.medworm.com/index.php?rid=2799888&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.002P%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2799888 Tue, 15 Sep 2009 20:40:00 +0100 2799888 All Human-Specific Gene Losses Are Present in the Genome as Pseudogenes http://www.medworm.com/index.php?rid=2799889&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0085%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2799889 Tue, 15 Sep 2009 20:39:14 +0100 2799889 Sorting Cancer Karyotypes by Elementary Operations http://www.medworm.com/index.php?rid=2799890&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0083%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2799890 Tue, 15 Sep 2009 20:39:12 +0100 2799890 Space of Gene/Species Trees Reconciliations and Parsimonious Models http://www.medworm.com/index.php?rid=2799891&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0095%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2799891 Tue, 15 Sep 2009 20:39:06 +0100 2799891 Genetic Map Refinement Using a Comparative Genomic Approach http://www.medworm.com/index.php?rid=2799892&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0094%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2799892 Tue, 15 Sep 2009 20:38:55 +0100 2799892 A Whole Genome Study and Identification of Specific Carcinogenic Regions of the Human Papilloma Viruses http://www.medworm.com/index.php?rid=2799893&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0091%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2799893 Tue, 15 Sep 2009 20:38:51 +0100 2799893 Hurdles and Sorting by Inversions: Combinatorial, Statistical, and Experimental Results http://www.medworm.com/index.php?rid=2785412&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0156%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2785412 Fri, 11 Sep 2009 13:14:49 +0100 2785412 A Fast and Exact Algorithm for the Median of Three Problem: A Graph Decomposition Approach http://www.medworm.com/index.php?rid=2785411&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0087%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2785411 Fri, 11 Sep 2009 13:14:43 +0100 2785411 Locating Large-Scale Gene Duplication Events through Reconciled Trees: Implications for Identifying Ancient Polyploidy Events in Plants http://www.medworm.com/index.php?rid=2711612&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0139%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Aug 2009, Vol. 16, No. 8: 1071-1083. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2711612 Tue, 18 Aug 2009 20:09:20 +0100 2711612 Computation of Median Gene Clusters http://www.medworm.com/index.php?rid=2711613&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0098%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Aug 2009, Vol. 16, No. 8: 1085-1099. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2711613 Tue, 18 Aug 2009 20:09:13 +0100 2711613 Complete Alternative Splicing Events Are Bubbles in Splicing Graphs http://www.medworm.com/index.php?rid=2711614&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0108%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Aug 2009, Vol. 16, No. 8: 1117-1140. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2711614 Tue, 18 Aug 2009 20:07:56 +0100 2711614 A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics http://www.medworm.com/index.php?rid=2662315&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0018%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2662315 Sat, 01 Aug 2009 15:15:31 +0100 2662315 Evolutionary History Reconstruction for Mammalian Complex Gene Clusters http://www.medworm.com/index.php?rid=2662316&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0040%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2662316 Sat, 01 Aug 2009 15:15:12 +0100 2662316 Automatic Parameter Learning for Multiple Local Network Alignment http://www.medworm.com/index.php?rid=2662317&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0099%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2662317 Sat, 01 Aug 2009 15:15:01 +0100 2662317 Spectrum Fusion: Using Multiple Mass Spectra for De Novo Peptide Sequencing http://www.medworm.com/index.php?rid=2662318&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0122%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2662318 Sat, 01 Aug 2009 15:14:36 +0100 2662318 Inferring Ancestries Efficiently in Admixed Populations with Linkage Disequilibrium http://www.medworm.com/index.php?rid=2662319&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0105%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2662319 Sat, 01 Aug 2009 15:14:35 +0100 2662319 Maximum Likelihood Genome Assembly http://www.medworm.com/index.php?rid=2662320&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0047%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2662320 Sat, 01 Aug 2009 15:14:29 +0100 2662320 Algorithms for Joint Optimization of Stability and Diversity in Planning Combinatorial Libraries of Chimeric Proteins http://www.medworm.com/index.php?rid=2662321&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0090%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2662321 Sat, 01 Aug 2009 15:14:23 +0100 2662321 An Integrative Network Approach to Map the Transcriptome to the Phenome http://www.medworm.com/index.php?rid=2637458&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0037%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2637458 Sat, 25 Jul 2009 03:15:27 +0100 2637458 Special RECOMB 2008 Issue http://www.medworm.com/index.php?rid=2637459&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.001P%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2637459 Fri, 24 Jul 2009 19:14:29 +0100 2637459 A Combined Expression-Interaction Model for Inferring the Temporal Activity of Transcription Factors http://www.medworm.com/index.php?rid=2637460&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0024%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2637460 Fri, 24 Jul 2009 19:14:28 +0100 2637460 Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast http://www.medworm.com/index.php?rid=2637461&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0023%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2637461 Fri, 24 Jul 2009 19:14:25 +0100 2637461 Fast and Accurate Alignment of Multiple Protein Networks http://www.medworm.com/index.php?rid=2629417&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0136%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2629417 Wed, 22 Jul 2009 17:40:32 +0100 2629417 Dynamic Programming Algorithms and Grammatical Modeling for Protein Beta-Sheet Prediction http://www.medworm.com/index.php?rid=2575895&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0228%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jul 2009, Vol. 16, No. 7: 945-957. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2575895 Mon, 06 Jul 2009 22:40:55 +0100 2575895 Simultaneous Class Discovery and Classification of Microarray Data Using Spectral Analysis http://www.medworm.com/index.php?rid=2575894&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0227%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jul 2009, Vol. 16, No. 7: 935-944. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2575894 Mon, 06 Jul 2009 22:40:54 +0100 2575894 Estimation of Gene Induction Enables a Relevance-Based Ranking of Gene Sets http://www.medworm.com/index.php?rid=2575896&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0226%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jul 2009, Vol. 16, No. 7: 959-967. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2575896 Mon, 06 Jul 2009 22:40:43 +0100 2575896 Stochastic Modeling and Simulation of the p53-MDM2/MDMX Loop http://www.medworm.com/index.php?rid=2575893&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0231%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jul 2009, Vol. 16, No. 7: 917-933. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2575893 Mon, 06 Jul 2009 22:40:42 +0100 2575893 Maximum Similarity: A New Formulation of Phylogenetic Reconstruction http://www.medworm.com/index.php?rid=2575890&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0232%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jul 2009, Vol. 16, No. 7: 887-896. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2575890 Mon, 06 Jul 2009 22:40:06 +0100 2575890 Maximal Information Transfer and Behavior Diversity in Random Threshold Networks http://www.medworm.com/index.php?rid=2575892&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0007%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jul 2009, Vol. 16, No. 7: 909-916. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2575892 Mon, 06 Jul 2009 22:40:05 +0100 2575892 Parametric Complexity of Sequence Assembly: Theory and Applications to Next Generation Sequencing http://www.medworm.com/index.php?rid=2575891&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.0005%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jul 2009, Vol. 16, No. 7: 897-908. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2575891 Mon, 06 Jul 2009 22:40:03 +0100 2575891 Data Structures for Parsimony Correlation and Biosequence Co-Evolution http://www.medworm.com/index.php?rid=2555491&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0107%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2555491 Tue, 30 Jun 2009 01:24:27 +0100 2555491 Inverse Protein Folding in 3D Hexagonal Prism Lattice under HPC Model http://www.medworm.com/index.php?rid=2503933&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0202%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jun 2009, Vol. 16, No. 6: 769-802. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2503933 Tue, 16 Jun 2009 18:26:39 +0100 2503933 K-Boost: A Scalable Algorithm for High-Quality Clustering of Microarray Gene Expression Data http://www.medworm.com/index.php?rid=2503938&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0201%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jun 2009, Vol. 16, No. 6: 859-873. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2503938 Sun, 14 Jun 2009 12:53:59 +0100 2503938 Modeling Signal Transduction in Enzyme Cascades with the Concept of Elementary Flux Modes http://www.medworm.com/index.php?rid=2503936&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0177%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jun 2009, Vol. 16, No. 6: 829-844. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2503936 Sun, 14 Jun 2009 12:53:56 +0100 2503936 Correction http://www.medworm.com/index.php?rid=2503940&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2009.00C1%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jun 2009, Vol. 16, No. 6: 886-886. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2503940 Sun, 14 Jun 2009 12:53:52 +0100 2503940 A New Computational Tool for Establishing Model Parameter Identifiability http://www.medworm.com/index.php?rid=2503939&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0211%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jun 2009, Vol. 16, No. 6: 875-885. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2503939 Sun, 14 Jun 2009 12:53:51 +0100 2503939 An O(n5) Algorithm for MFE Prediction of Kissing Hairpins and 4-Chains in Nucleic Acids http://www.medworm.com/index.php?rid=2503934&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0219%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jun 2009, Vol. 16, No. 6: 803-815. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2503934 Sun, 14 Jun 2009 12:53:35 +0100 2503934 Statistical Distributions of Sequencing by Synthesis with Probabilistic Nucleotide Incorporation http://www.medworm.com/index.php?rid=2503935&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0215%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jun 2009, Vol. 16, No. 6: 817-827. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2503935 Sun, 14 Jun 2009 12:53:29 +0100 2503935 Statistical Models for Local Occurrences of RNA Structures http://www.medworm.com/index.php?rid=2503937&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0180%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jun 2009, Vol. 16, No. 6: 845-858. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2503937 Sun, 14 Jun 2009 12:53:18 +0100 2503937 Conditional Graphical Models for Protein Structural Motif Recognition http://www.medworm.com/index.php?rid=2413237&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0176%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology May 2009, Vol. 16, No. 5: 639-657. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2413237 Wed, 13 May 2009 13:26:52 +0100 2413237 Fast and Accurate Calculation of a Computationally Intensive Statistic for Mapping Disease Genes http://www.medworm.com/index.php?rid=2413238&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0175%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology May 2009, Vol. 16, No. 5: 659-676. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2413238 Mon, 11 May 2009 19:37:23 +0100 2413238 Interpretable Numerical Descriptors of Amino Acid Space http://www.medworm.com/index.php?rid=2413241&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0173%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology May 2009, Vol. 16, No. 5: 703-723. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2413241 Mon, 11 May 2009 19:37:13 +0100 2413241 A Regularized Method for Selecting Nested Groups of Relevant Genes from Microarray Data http://www.medworm.com/index.php?rid=2413239&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0171%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology May 2009, Vol. 16, No. 5: 677-690. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2413239 Mon, 11 May 2009 19:36:48 +0100 2413239 Logic Integer Programming Models for Signaling Networks http://www.medworm.com/index.php?rid=2413242&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0163%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology May 2009, Vol. 16, No. 5: 725-743. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2413242 Mon, 11 May 2009 19:36:47 +0100 2413242 Predict Collagen Hydroxyproline Sites Using Support Vector Machines http://www.medworm.com/index.php?rid=2413240&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0167%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology May 2009, Vol. 16, No. 5: 691-702. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2413240 Mon, 11 May 2009 19:36:43 +0100 2413240 Mining Subspace Clusters from DNA Microarray Data Using Large Itemset Techniques http://www.medworm.com/index.php?rid=2413243&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0161%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology May 2009, Vol. 16, No. 5: 745-768. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2413243 Mon, 11 May 2009 19:36:33 +0100 2413243 CUSA and CUDE: GPU-Accelerated Methods for Estimating Solvent Accessible Surface Area and Desolvation http://www.medworm.com/index.php?rid=2324787&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0157%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Apr 2009, Vol. 16, No. 4: 523-537. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2324787 Sat, 11 Apr 2009 14:12:32 +0100 2324787 Delayed Stochastic Model of Transcription at the Single Nucleotide Level http://www.medworm.com/index.php?rid=2324789&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0153%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Apr 2009, Vol. 16, No. 4: 539-553. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2324789 Sat, 11 Apr 2009 14:10:05 +0100 2324789 Genome-Wide Search for Local DNA Segments with Anomalous GC-Content http://www.medworm.com/index.php?rid=2324791&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0159%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Apr 2009, Vol. 16, No. 4: 555-564. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2324791 Sat, 11 Apr 2009 14:10:03 +0100 2324791 Statistical Comparison Framework and Visualization Scheme for Ranking-Based Algorithms in High-Throughput Genome-Wide Studies http://www.medworm.com/index.php?rid=2324793&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0151%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Apr 2009, Vol. 16, No. 4: 565-577. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2324793 Sat, 11 Apr 2009 14:10:01 +0100 2324793 Applying Fuzzy Technologies to Equivalence Learning in Protein Classification http://www.medworm.com/index.php?rid=2324797&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0147%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Apr 2009, Vol. 16, No. 4: 611-623. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2324797 Sat, 11 Apr 2009 14:09:59 +0100 2324797 Properties of Balanced Permutations http://www.medworm.com/index.php?rid=2324799&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0144%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Apr 2009, Vol. 16, No. 4: 625-638. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2324799 Sat, 11 Apr 2009 14:09:53 +0100 2324799 Geometric Aspects of Biological Sequence Comparison http://www.medworm.com/index.php?rid=2324795&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0100%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Apr 2009, Vol. 16, No. 4: 579-610. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2324795 Sat, 11 Apr 2009 14:09:35 +0100 2324795 Analysis of Gene Sets Based on the Underlying Regulatory Network http://www.medworm.com/index.php?rid=2229136&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0081%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Mar 2009, Vol. 16, No. 3: 407-426. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2229136 Tue, 03 Mar 2009 01:46:00 +0100 2229136 Learned Random-Walk Kernels and Empirical-Map Kernels for Protein Sequence Classification http://www.medworm.com/index.php?rid=2229139&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0031%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Mar 2009, Vol. 16, No. 3: 457-474. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2229139 Mon, 02 Mar 2009 22:44:05 +0100 2229139 A Model-Based Approach to Gene Clustering with Missing Observation Reconstruction in a Markov Random Field Framework http://www.medworm.com/index.php?rid=2229140&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0078%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Mar 2009, Vol. 16, No. 3: 475-486. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2229140 Mon, 02 Mar 2009 22:44:02 +0100 2229140 The Application of 3D Zernike Moments for the Description of “Model-Free” Molecular Structure, Functional Motion, and Structural Reliability http://www.medworm.com/index.php?rid=2229141&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0083%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Mar 2009, Vol. 16, No. 3: 487-500. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2229141 Mon, 02 Mar 2009 22:43:59 +0100 2229141 A Sharp Error Probability Estimate for the Reconstruction of Phylogenetic Quartets by the Four-Point Method http://www.medworm.com/index.php?rid=2229138&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0123%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Mar 2009, Vol. 16, No. 3: 443-456. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2229138 Mon, 02 Mar 2009 22:43:03 +0100 2229138 Robust Stochastic Chemical Reaction Networks and Bounded Tau-Leaping http://www.medworm.com/index.php?rid=2229142&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0063%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Mar 2009, Vol. 16, No. 3: 501-522. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2229142 Mon, 02 Mar 2009 22:43:01 +0100 2229142 Optimizing Energy Potential for Protein Fold Recognition with Parametric Evaluation Function http://www.medworm.com/index.php?rid=2229137&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0128%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Mar 2009, Vol. 16, No. 3: 427-442. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2229137 Mon, 02 Mar 2009 22:42:57 +0100 2229137 Non-Homologous Structured CRMs from the Ciona Genome http://www.medworm.com/index.php?rid=2158657&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.20TT%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Feb 2009, Vol. 16, No. 2: 369-377. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2158657 Wed, 04 Feb 2009 22:11:50 +0100 2158657 Timing of Gene Expression Responses to Environmental Changes http://www.medworm.com/index.php?rid=2158651&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.13TT%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Feb 2009, Vol. 16, No. 2: 279-290. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2158651 Wed, 04 Feb 2009 22:11:41 +0100 2158651 Targeted Recruitment of Histone Modifications in Humans Predicted by Genomic Sequences http://www.medworm.com/index.php?rid=2158655&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.18TT%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Feb 2009, Vol. 16, No. 2: 341-355. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2158655 Wed, 04 Feb 2009 22:11:00 +0100 2158655 Systems-Level Evidence of Transcriptional Co-Regulation of Yeast Protein Complexes http://www.medworm.com/index.php?rid=2158654&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.17TT%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Feb 2009, Vol. 16, No. 2: 331-339. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2158654 Wed, 04 Feb 2009 22:10:55 +0100 2158654 GADEM: A Genetic Algorithm Guided Formation of Spaced Dyads Coupled with an EM Algorithm for Motif Discovery http://www.medworm.com/index.php?rid=2158653&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.16TT%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Feb 2009, Vol. 16, No. 2: 317-329. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2158653 Wed, 04 Feb 2009 22:10:34 +0100 2158653 Inferring Transcription Factor Targets from Gene Expression Changes and Predicted Promoter Occupancy http://www.medworm.com/index.php?rid=2158656&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.19TT%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Feb 2009, Vol. 16, No. 2: 357-368. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2158656 Wed, 04 Feb 2009 22:10:32 +0100 2158656 Higher-Order Genomic Organization of Cellular Functions in Yeast http://www.medworm.com/index.php?rid=2158652&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.15TT%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Feb 2009, Vol. 16, No. 2: 303-316. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2158652 Wed, 04 Feb 2009 22:10:30 +0100 2158652 Identifying Network of Drug Mode of Action by Gene Expression Profiling http://www.medworm.com/index.php?rid=2145937&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.10TT%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0: 1-11. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2145937 Fri, 30 Jan 2009 17:03:05 +0100 2145937 Revealing Biological Modules via Graph Summarization http://www.medworm.com/index.php?rid=2145938&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.11TT%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0: 1-12. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2145938 Fri, 30 Jan 2009 16:58:43 +0100 2145938 Generating Realistic In Silico Gene Networks for Performance Assessment of Reverse Engineering Methods http://www.medworm.com/index.php?rid=2145939&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.09TT%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0: 1-11. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2145939 Fri, 30 Jan 2009 16:58:42 +0100 2145939 Integrating Biological Knowledge with Gene Expression Profiles for Survival Prediction of Cancer http://www.medworm.com/index.php?rid=2145940&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.12TT%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0: 1-14. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2145940 Fri, 30 Jan 2009 16:58:41 +0100 2145940 How to Synchronize Biological Clocks http://www.medworm.com/index.php?rid=2145941&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.21TT%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0: 1-15. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2145941 Fri, 30 Jan 2009 16:58:39 +0100 2145941 Reverse Engineering Molecular Regulatory Networks from Microarray Data with qp-Graphs http://www.medworm.com/index.php?rid=2143165&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.08TT%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0: 1-15. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2143165 Thu, 29 Jan 2009 13:49:11 +0100 2143165 Learning Signaling Network Structures with Sparsely Distributed Data http://www.medworm.com/index.php?rid=2143166&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.07TT%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0: 1-12. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2143166 Thu, 29 Jan 2009 13:46:19 +0100 2143166 Topological Signatures of Species Interactions in Metabolic Networks http://www.medworm.com/index.php?rid=2143167&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.06TT%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0: 1-10. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2143167 Thu, 29 Jan 2009 13:44:40 +0100 2143167 A Network-Based Method for Predicting Disease-Causing Genes http://www.medworm.com/index.php?rid=2143168&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.05TT%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0: 1-9. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2143168 Thu, 29 Jan 2009 13:41:24 +0100 2143168 Bottlenecks and Hubs in Inferred Networks Are Important for Virulence in Salmonella typhimurium http://www.medworm.com/index.php?rid=2143169&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.04TT%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0: 1-12. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2143169 Thu, 29 Jan 2009 13:39:14 +0100 2143169 The Effect of Insertions and Deletions on Wirings in Protein-Protein Interaction Networks: A Large-Scale Study http://www.medworm.com/index.php?rid=2143170&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.03TT%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0: 1-9. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2143170 Thu, 29 Jan 2009 12:30:53 +0100 2143170 Querying Pathways in Protein Interaction Networks Based on Hidden Markov Models http://www.medworm.com/index.php?rid=2143171&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.02TT%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0: 1-13. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2143171 Thu, 29 Jan 2009 12:25:55 +0100 2143171 Predicting Protein Complexes from PPI Data: A Core-Attachment Approach http://www.medworm.com/index.php?rid=2143172&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.01TT%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0: 1-12. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2143172 Thu, 29 Jan 2009 12:24:02 +0100 2143172 Modeling Exopeptidase Activity from LC-MS Data http://www.medworm.com/index.php?rid=2106081&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.22TT%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0: 1-12. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2106081 Wed, 14 Jan 2009 22:15:23 +0100 2106081 Metabolic Flux Correlations, Genetic Interactions, and Disease http://www.medworm.com/index.php?rid=2106082&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.14TT%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0: 1-12. (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2106082 Wed, 14 Jan 2009 22:14:30 +0100 2106082 Exact Calculation of Distributions on Integers, with Application to Sequence Alignment http://www.medworm.com/index.php?rid=2078546&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0137%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jan 2009, Vol. 16, No. 1: 1-18. Computational biology is replete with high-dimensional discrete prediction and inference problems. Dynamic programming recursions can be applied to several of the most important of these, including sequence alignment, RNA secondary-structure prediction, ... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2078546 Sun, 04 Jan 2009 16:33:38 +0100 2078546 Boolean Network Approach to Negative Feedback Loops of the p53 Pathways: Synchronized Dynamics and Stochastic Limit Cycles http://www.medworm.com/index.php?rid=2078550&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2007.0181%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jan 2009, Vol. 16, No. 1: 119-132. Deterministic and stochastic Boolean network models are built for the dynamics of negative feedback loops of the p53 pathways. It is shown that the main function of the negative feedback in the p53 pathways is to keep p53 at a low steady state level, and ... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2078550 Sun, 04 Jan 2009 15:00:38 +0100 2078550 Detecting Alternative Gene Structures from Spliced ESTs: A Computational Approach http://www.medworm.com/index.php?rid=2078547&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0028%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jan 2009, Vol. 16, No. 1: 43-66. Alternative splicing (AS) is currently considered as one of the main mechanisms able to explain the huge gap between the number of predicted genes and the high complexity of the proteome in humans. The rapid growth of Expressed Sequence Tag (EST) data has ... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2078547 Sun, 04 Jan 2009 15:00:10 +0100 2078547 On the Computational Complexity of the Reticulate Cophylogeny Reconstruction Problem http://www.medworm.com/index.php?rid=2078549&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0084%3Fai%3Drz%26mi%3Do0fy%26af%3DR We present a proof that shows that the general problem of reconciling ... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2078549 Sun, 04 Jan 2009 15:00:09 +0100 2078549 Extended HP Model for Protein Structure Prediction http://www.medworm.com/index.php?rid=2078548&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0082%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Jan 2009, Vol. 16, No. 1: 85-103. This paper describes a detailed investigation of a lattice-based HP (hydrophobic-hydrophilic) model for ab initio protein structure prediction (PSP). The outcome of the simplified HP lattice model has high degeneracy, which could mislead the prediction. ... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2078548 Sun, 04 Jan 2009 15:00:08 +0100 2078548 Stable Structure-Approximating Inverse Protein Folding in 2D Hydrophobic-Polar-Cysteine (HPC) Model http://www.medworm.com/index.php?rid=2037233&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0096%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0: 1-12. The inverse protein folding problem is that of designing an amino acid sequence which folds into a prescribed conformation/structure. This problem arises in drug design where a particular structure is necessary to ensure proper protein-protein ... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2037233 Mon, 15 Dec 2008 13:59:08 +0100 2037233 Statistical Distributions of Pyrosequencing http://www.medworm.com/index.php?rid=2037235&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0106%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0: 1-12. Pyrosequencing is emerging as one of the important next-generation sequencing technologies. We derive the statistical distributions of this technique in terms of nucleotide probabilities of the target sequences. We give exact distributions both for fixed ... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2037235 Mon, 15 Dec 2008 13:57:57 +0100 2037235 Optimal Designs for One- and Two-Color Microarrays Using Mixed Models: A Comparative Evaluation of Their Efficiencies http://www.medworm.com/index.php?rid=2037234&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0048%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0: 1-17. Comparative studies between the one- and two-color microarrays provide supportive evidence for similarities of results on differential gene expression. So far, no design comparisons between the two platforms have been undertaken. With the objective of ... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=2037234 Mon, 15 Dec 2008 13:57:57 +0100 2037234 Coding Region Prediction Based on a Universal DNA Sequence Representation Method http://www.medworm.com/index.php?rid=1997933&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0041%3Fai%3Drz%26mi%3Do0fy%26af%3DR In this study,... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=1997933 Sat, 29 Nov 2008 15:35:20 +0100 1997933 BayesMD: Flexible Biological Modeling for Motif Discovery http://www.medworm.com/index.php?rid=1997939&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2007.0176%3Fai%3Drz%26mi%3Do0fy%26af%3DR We present BayesMD, a Bayesian Motif Discovery model with several new features. Three different types of biological a priori knowledge are built into the framework in a modular fashion. A mixture of Dirichlets is used as prior over nucleotide ... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=1997939 Sat, 29 Nov 2008 15:35:07 +0100 1997939 A Bayesian Nonparametric Approach for Comparing Clustering Structures in EST Libraries http://www.medworm.com/index.php?rid=1997937&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0043%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Dec 2008, Vol. 15, No. 10: 1315-1327. Inference for Expressed Sequence Tags (ESTs) data is considered. We focus on evaluating the redundancy of a cDNA library and, more importantly, on comparing different libraries on the basis of their clustering structure. The numerical results we achieve ... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=1997937 Sat, 29 Nov 2008 15:34:59 +0100 1997937 Run Probabilities of Seed-Like Patterns and Identifying Good Transition Seeds http://www.medworm.com/index.php?rid=1997936&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2007.0209%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Dec 2008, Vol. 15, No. 10: 1295-1313. Transition seeds exhibit a good tradeoff between sensitivity and specificity for homology search in both coding and non-coding regions. However, identifying good transition seeds is intractable. This work studies the hit probability of high-order seed ... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=1997936 Sat, 29 Nov 2008 15:34:59 +0100 1997936 Biclustering Sparse Binary Genomic Data http://www.medworm.com/index.php?rid=1997938&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0066%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Dec 2008, Vol. 15, No. 10: 1329-1345. Genomic datasets often consist of large, binary, sparse data matrices. In such a dataset, one is often interested in finding contiguous blocks that (mostly) contain ones. This is a biclustering problem, and while many algorithms have been proposed to ... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=1997938 Sat, 29 Nov 2008 15:34:58 +0100 1997938 Canonical RNA Pseudoknot Structures http://www.medworm.com/index.php?rid=1997934&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0121%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Dec 2008, Vol. 15, No. 10: 1257-1273. In this paper, we study k-noncrossing, σ-canonical RNA pseudoknot structures with minimum arc-length greater or equal to four. Let Tk, σ[4] (n) denote the number of these structures. We derive exact enumeration results by computing the generating ... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=1997934 Sat, 29 Nov 2008 15:34:56 +0100 1997934 Structural Identification of Piecewise-Linear Models of Genetic Regulatory Networks http://www.medworm.com/index.php?rid=1997940&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0109%3Fai%3Drz%26mi%3Do0fy%26af%3DR We present a method for the structural identification of genetic regulatory networks (GRNs), based on the use of a class of Piecewise-Linear (PL) models. These models consist of a set of decoupled linear models describing the different modes of operation ... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=1997940 Sat, 29 Nov 2008 15:34:47 +0100 1997940 An Efficient Voting Algorithm for Finding Additive Biclusters with Random Background http://www.medworm.com/index.php?rid=1997935&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2007.0219%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Dec 2008, Vol. 15, No. 10: 1275-1293. The biclustering problem has been extensively studied in many areas, including e-commerce, data mining, machine learning, pattern recognition, statistics, and, more recently, computational biology. Given an n × m matrix A (n ≥ m), the main goal of ... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=1997935 Sat, 29 Nov 2008 15:34:42 +0100 1997935 Simulating Virtual Protein Cα Traces with Applications http://www.medworm.com/index.php?rid=1919350&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2007.0092%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Nov 2008, Vol. 15, No. 9: 1209-1220. We propose a simple procedure for generating virtual protein Cα traces. One of the key ingredients of our method, to build a three-dimensional structure from a random sequence of amino acids, is to work directly on torsional angles of the chain which we ... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=1919350 Thu, 30 Oct 2008 15:07:35 +0100 1919350 Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity http://www.medworm.com/index.php?rid=1919347&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2007.0133%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Nov 2008, Vol. 15, No. 9: 1155-1171. The presence of genotyping errors can invalidate statistical tests for linkage and disease association, particularly for methods based on haplotype analysis. Becker et al. have recently proposed a simple likelihood ratio approach for detecting errors in ... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=1919347 Thu, 30 Oct 2008 15:07:31 +0100 1919347 Analyzing Protein-Protein Spatial-Temporal Dependencies from Image Sequences Using Fuzzy Temporal Random Sets http://www.medworm.com/index.php?rid=1919351&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0055%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Nov 2008, Vol. 15, No. 9: 1221-1236. Total Internal Reflection Fluorescence Microscopy (TIRFM) allows us to image fluorescenttagged proteins near the plasma membrane of living cells with high spatial-temporal resolution. Using TIRFM imaging of GFP-tagged clathrin endocytic proteins, areas of ... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=1919351 Thu, 30 Oct 2008 15:07:30 +0100 1919351 Pseudoknot RNA Structures with Arc-Length ≥4 http://www.medworm.com/index.php?rid=1919349&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0051%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Nov 2008, Vol. 15, No. 9: 1195-1208. In this article, we study k-noncrossing RNA structures with minimum arc-length 4 and at most k − 1 mutually crossing bonds. Let Tk[4](n) denote the number of k-noncrossing RNA structures with arc-length ≥4 over n vertices. We (a) prove a functional ... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=1919349 Thu, 30 Oct 2008 15:07:29 +0100 1919349 Significance of Gapped Sequence Alignments http://www.medworm.com/index.php?rid=1919348&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0125%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology Nov 2008, Vol. 15, No. 9: 1187-1194. Measurement of the the statistical significance of extreme sequence alignment scores is key to many important applications, but it is difficult. To precisely approximate alignment score significance, we draw random samples directly from a well chosen, ... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=1919348 Thu, 30 Oct 2008 15:07:02 +0100 1919348 Estimating the Ancestral Recombinations Graph (ARG) as Compatible Networks of SNP Patterns http://www.medworm.com/index.php?rid=1866946&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0065%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0: 1-22. Traditionally nonrecombinant genome, i.e., mtDNA or Y chromosome, has been used for phylogeography, notably for ease of analysis. The topology of the phylogeny structure in this case is an acyclic graph, which is often a tree, is easy to comprehend and ... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=1866946 Fri, 10 Oct 2008 11:24:53 +0100 1866946 Heuristic Approach to Sparse Approximation of Gene Regulatory Networks http://www.medworm.com/index.php?rid=1866947&cid=s_32699_62_f&fid=32699&url=http%3A%2F%2Fwww.liebertonline.com%2Fdoi%2Fabs%2F10.1089%2Fcmb.2008.0087%3Fai%3Drz%26mi%3Do0fy%26af%3DR Journal of Computational Biology , Vol. 0, No. 0: 1-14. Determining the structure of the gene regulatory network using the information in genomewide profiles of mRNA abundance, such as microarray data, poses several challenges. Typically, “static” rather than dynamical profile measurements, such as those ... (Source: Journal of Computational Biology) Journal of Computational Biology journals http://www.medworm.com/rss/comments.php?id=1866947 Fri, 10 Oct 2008 11:24:34 +0100 1866947