This is a selection of articles from the January 2007 archive. Click here for this month's Biomedical Science headlines.
A computational model for functional mapping of genes that regulate intracellular circadian rhythms
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Source: Theoretical Biology and Medical Modelling - January 30, 2007 Authors: Tian Liu, Xueli Liu, Yunmei Chen and Rongling Wu Source Type: news
A computational model for functional mapping of genes that regulate intra-cellular circadian rhythms
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Source: Theoretical Biology and Medical Modelling - January 30, 2007 Authors: Tian Liu, Xueli Liu, Yunmei Chen and Rongling Wu Source Type: news
Kinetic modelling of photototrophic biofilms-the PHOBIA model
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Source: Biotechnology and Bioengineering - January 26, 2007 Authors: Gundula Wolf, Cristian Picioreanu, Mark C.M. van Loosdrecht Source Type: news
Morphological instability and cancer invasion:
a 'splashing water drop' analogy
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Source: Theoretical Biology and Medical Modelling - January 25, 2007 Authors: Caterina Guiot, Pier P Delsanto and Thomas S Deisboeck Source Type: news
Bioaugmentation of a two-stage thermophilic (68°C/55°C) anaerobic digestion concept for improvement of the methane yield from cattle manure
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Source: Biotechnology and Bioengineering - January 25, 2007 Authors: Henrik Bangsø Nielsen, Zuzana Mladenovska, Birgitte Kiær Ahring Source Type: news
Morphological instability and cancer invasion: a 'splashing water drop' analogy
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Source: Theoretical Biology and Medical Modelling - January 25, 2007 Authors: Caterina Guiot, Pier P Delsanto and Thomas S Deisboeck Source Type: news
Mesophilic and thermophilic biotreatment of BTEX-polluted air in reactors
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Source: Biotechnology and Bioengineering - January 24, 2007 Authors: Balsam T. Mohammad, María C. Veiga, Christian Kennes Source Type: news
Computational identification of combinatorial regulation and transcription factor binding sites
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Source: Biotechnology and Bioengineering - January 24, 2007 Authors: Taewoo Ryu, Younghoon Kim, Dae-Won Kim, Doheon Lee Source Type: news
Submerged monoxenic culture of the entomopathogenic nematode Steinernema carpocapsae in an internal-loop airlift bioreactor using two configurations of the inner tube
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Source: Biotechnology and Bioengineering - January 24, 2007 Authors: Norberto Chavarría-Hernández, René Sanjuan-Galindo, Blanca-Rosa Rodríguez-Pastrana, Luis Medina-Torres, Adriana-Inés Rodríguez-Hernández Source Type: news
Enhanced preparation of adeno-associated viral vectors by using high hydrostatic pressure to selectively inactivate helper adenovirus
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Source: Biotechnology and Bioengineering - January 24, 2007 Authors: Joshua N. Leonard, Peter Ferstl, Antonio Delgado, David V. Schaffer Source Type: news
Solution structure of the twelfth cysteine-rich ligand-binding repeat in rat megalin.
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Source: Journal of Bimolecular NMR - January 24, 2007 Authors: Wolf CA, Dancea F, Shi M, Bade-Noskova V, Rüterjans H, Kerjaschki D, Lücke C Source Type: news
Understanding signaling in yeast: Insights from network analysis
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Source: Biotechnology and Bioengineering - January 24, 2007 Authors: K Yalç[inodot]n Arga, Z [Idot]sen Önsan, Betül K[inodot]rdar, Kutlu Ö Ülgen, Jens Nielsen Source Type: news
An additional simple denitrification bioreactor using packed gel envelopes applicable to industrial wastewater treatment
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Source: Biotechnology and Bioengineering - January 24, 2007 Authors: Masahiko Morita, Hiroaki Uemoto, Atsushi Watanabe Source Type: news
A method for three dimensional protein characterization and its application to a complex plant (corn) extract
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Source: Biotechnology and Bioengineering - January 24, 2007 Authors: Zhengrong Gu, Charles E. Glatz Source Type: news
Mixed-time parallel evolution in multiple quantum NMR experiments: sensitivity and resolution enhancement in heteronuclear NMR.
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Source: Journal of Bimolecular NMR - January 24, 2007 Authors: Ying J, Chill JH, Louis JM, Bax A Source Type: news
Genome-scale analysis of Saccharomyces cerevisiae metabolism and ethanol production in fed-batch culture
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Source: Biotechnology and Bioengineering - January 22, 2007 Authors: Jared L. Hjersted, Michael A. Henson, Radhakrishnan Mahadevan Source Type: news
Design and analysis of a long-term live-cell imaging chamber for tracking cellular dynamics within cultured human islets of Langerhans
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Source: Biotechnology and Bioengineering - January 22, 2007 Authors: Duane Moogk, Stephen Hanley, John Ramunas, April Blaylock, Jana Skorepova, Lawrence Rosenberg, Eric Jervis Source Type: news
Selective desorption of carbon dioxide from sewage sludge for in-situ methane enrichment - part II: Modelling and evaluation of experiments
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Source: Biotechnology and Bioengineering - January 20, 2007 Authors: Anna Lindberg, Åke C Rasmuson Source Type: news
Improved pulse sequences for sequence specific assignment of aromatic proton resonances in proteins.
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Source: Journal of Bimolecular NMR - January 20, 2007 Authors: Löhr F, Hänsel R, Rogov VV, Dötsch V Source Type: news
Improving cell-free protein synthesis for stable-isotope labeling.
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Source: Journal of Bimolecular NMR - January 20, 2007 Authors: Matsuda T, Koshiba S, Tochio N, Seki E, Iwasaki N, Yabuki T, Inoue M, Yokoyama S, Kigawa T Source Type: news
Unraveling protein dynamics through fast spectral density mapping.
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Source: Journal of Bimolecular NMR - January 20, 2007 Authors: Ropars V, Bouguet-Bonnet S, Auguin D, Barthe P, Canet D, Roumestand C Source Type: news
Pairwise NMR experiments for the determination of protein backbone dihedral angle Phi based on cross-correlated spin relaxation.
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Source: Journal of Bimolecular NMR - January 20, 2007 Authors: Takahashi H, Shimada I Source Type: news
Prolonged cell-free protein synthesis using dual energy sources: Combined use of creatine phosphate and glucose for the efficient supply of ATP and retarded accumulation of phosphate
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Source: Biotechnology and Bioengineering - January 19, 2007 Authors: Tae-Wan Kim, In-Seok Oh, Jung-Won Keum, Yong-Chan Kwon, Ju-Young Byun, Kyung-Ho Lee, Cha-Yong Choi, Dong-Myung Kim Source Type: news
Identification of flux regulation coefficients from elementary flux modes: A systems biology tool for analysis of metabolic networks
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Source: Biotechnology and Bioengineering - January 19, 2007 Authors: Intawat Nookaew, Asawin Meechai, Chinae Thammarongtham, Kobkul Loateng, Vasimon Ruanglek, Supapon Cheevadhanarak, Jens Nielsen, Sakarindr Bhumiratana Source Type: news
Peptide tags for enhanced cellular and protein adhesion to single-crystalline sapphire
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Source: Biotechnology and Bioengineering - January 19, 2007 Authors: Eric M. Krauland, Beau R. Peelle, K. Dane Wittrup, Angela M. Belcher Source Type: news
Influence of culture medium supplementation of tobacco NT1 cell suspension cultures on the N-glycosylation of human secreted alkaline phosphatase
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Source: Biotechnology and Bioengineering - January 19, 2007 Authors: Alejandro Becerra-Arteaga, Michael L. Shuler Source Type: news
Bayesian profiling of molecular signatures to predict event times
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Source: Theoretical Biology and Medical Modelling - January 19, 2007 Authors: Dabao Zhang and Min Zhang Source Type: news
J-Spectroscopy in the presence of residual dipolar couplings: determination of one-bond coupling constants and scalable resolution.
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Source: Journal of Bimolecular NMR - January 19, 2007 Authors: Furrer J, John M, Kessler H, Luy B Source Type: news
Effect of sulfide on nitrate reduction in mixed methanogenic cultures
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Source: Biotechnology and Bioengineering - January 19, 2007 Authors: A. Evren Tugtas, Spyros G. Pavlostathis Source Type: news
The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins.
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Source: Journal of Bimolecular NMR - January 18, 2007 Source Type: news
Measurement of 15N relaxation in the detergent-solubilized tetrameric KcsA potassium channel.
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Source: Journal of Bimolecular NMR - January 18, 2007 Source Type: news
Use of biosynthetic fractional (13)C-labeling for backbone NMR assignment of proteins.
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Source: Journal of Bimolecular NMR - January 18, 2007 Source Type: news
Mapping protein-protein interaction by 13C'-detected heteronuclear NMR spectroscopy.
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Source: Journal of Bimolecular NMR - January 18, 2007 Source Type: news
Enhanced signal dispersion in saturation transfer difference experiments by conversion to a 1D-STD-homodecoupled spectrum.
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Source: Journal of Bimolecular NMR - January 18, 2007 Source Type: news
(15)N-{ (1)H} NOE experiment at high magnetic field strengths.
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Source: Journal of Bimolecular NMR - January 18, 2007 Source Type: news
Quantifying Lipari-Szabo modelfree parameters from 13CO NMR relaxation experiments.
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Source: Journal of Bimolecular NMR - January 18, 2007 Source Type: news
Directed cell migration in the presence of obstacles
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Source: Theoretical Biology and Medical Modelling - January 16, 2007 Authors: Ramon Grima Source Type: news
Prediction of volumetric productivity of an outdoor photobioreactor
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Source: Biotechnology and Bioengineering - January 14, 2007 Authors: Rouke Bosma, Erik van Zessen, Johannes H. Reith, Johannes Tramper, René H. Wijffels Source Type: news
Three-dimensional experiment for solid-state NMR of aligned protein samples in high field magnets.
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Source: Journal of Bimolecular NMR - January 13, 2007 Source Type: news
Endothelins Mediate Neutrophil Activation, ProMMP-9 Release and Endothelial Cell Detachment
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Source: Inflammation - January 13, 2007 Tags: Inflammation Source Type: news
Spectral editing: selection of methyl groups in multidimensional solid-state magic-angle spinning NMR.
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Source: Journal of Bimolecular NMR - January 12, 2007 Source Type: news
General method of preparation of uniformly 13C, 15N-labeled DNA fragments for NMR analysis of DNA structures.
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Source: Journal of Bimolecular NMR - January 12, 2007 Source Type: news
Random sampling of evolution time space and Fourier transform processing.
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Source: Journal of Bimolecular NMR - January 12, 2007 Source Type: news
A nomenclature and data model to describe NMR experiments.
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Source: Journal of Bimolecular NMR - January 12, 2007 Source Type: news
An automated assignment-free Bayesian approach for accurately identifying proton contacts from NOESY data.
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Source: Journal of Bimolecular NMR - January 12, 2007 Source Type: news
In-cell NMR spectroscopy of proteins inside Xenopus laevis oocytes.
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Source: Journal of Bimolecular NMR - January 12, 2007 Source Type: news
NMR solution structure of the acylphosphatase from Escherichia coli.
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Source: Journal of Bimolecular NMR - January 12, 2007 Source Type: news
Rapid responses of ribosomal RNA synthesis to nutrient shifts
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Source: Biotechnology and Bioengineering - January 12, 2007 Authors: Patrick F. Suthers, Richard L. Gourse, John Yin Source Type: news
Design of highly efficient cellulase mixtures for enzymatic hydrolysis of cellulose
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Source: Biotechnology and Bioengineering - January 12, 2007 Authors: Alexander V. Gusakov, Tatyana N. Salanovich, Alexey I. Antonov, Boris B. Ustinov, Oleg N. Okunev, Richard Burlingame, Mark Emalfarb, Marco Baez, Arkady P. Sinitsyn Source Type: news
Exploiting the pressure effect on lipase-catalyzed wax ester synthesis in dense carbon dioxide
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Source: Biotechnology and Bioengineering - January 12, 2007 Authors: [Zcaron]eljko Knez, Chiara Giulia Laudani, Maja Habulin, Ernesto Reverchon Source Type: news
Natural cellulose fibers from switchgrass with tensile properties similar to cotton and linen
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Source: Biotechnology and Bioengineering - January 12, 2007 Authors: Narendra Reddy, Yiqi Yang Source Type: news
Dibutyl phthalate biodegradation by the white rot fungus, Polyporus brumalis
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Source: Biotechnology and Bioengineering - January 12, 2007 Authors: Soo-Min Lee, Jae-Won Lee, Bon-Wook Koo, Myung-Kil Kim, Don-Ha Choi, In-Gyu Choi Source Type: news
Backbone and side chain (1)H, (13)C, and (15)N resonance assignments of AF2241 from Archaeoglobus fulgidus.
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Source: Journal of Bimolecular NMR - January 10, 2007 Source Type: news
NMR resonance assignments of the human high mobility group protein HMGA1.
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Source: Journal of Bimolecular NMR - January 10, 2007 Source Type: news
Complete (1)H, (13)C and (15)N resonance assignments of Blo t 5, a major mite allergen from Blomia tropicalis.
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Source: Journal of Bimolecular NMR - January 10, 2007 Source Type: news
Cell patterning using magnetite nanoparticles and magnetic force
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Source: Biotechnology and Bioengineering - January 10, 2007 Authors: Kosuke Ino, Akira Ito, Hiroyuki Honda Source Type: news
Effect of wall shear rate on biofilm deposition and grazing in drinking water flow chambers
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Source: Biotechnology and Bioengineering - January 10, 2007 Authors: Tony Paris, Salaheddine Skali-Lami, Jean-Claude Block Source Type: news
A multi-step kinetic model for substrate assimilation and bacterial growth: application to benzene biodegradation
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Source: Biotechnology and Bioengineering - January 10, 2007 Authors: Bordel S, Muñoz R, Diaz LF, Villaverde S Source Type: news
Optimization of a jet-propelled particle injection system for the uniform transdermal delivery of drug/vaccine
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Source: Biotechnology and Bioengineering - January 10, 2007 Authors: Yi Liu, A.F. Kendall Source Type: news
Prediction of mass transfer coefficients in non-Newtonian fermentation media using first-principles methods
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Source: Biotechnology and Bioengineering - January 10, 2007 Authors: Stefan Radl, Johannes G. Khinast Source Type: news
Distributed state simulation of endogenous processes in biological wastewater treatment
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Source: Biotechnology and Bioengineering - January 10, 2007 Authors: Andrew J. Schuler, David Jassby Source Type: news
Sulfide oxidation under halo-alkaline conditions in a fed-batch bioreactor
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Source: Biotechnology and Bioengineering - January 10, 2007 Authors: Pim L.F. van den Bosch, Otto C. van Beusekom, Cees J.N. Buisman, Albert J.H. Janssen Source Type: news
Flow modelling in a novel non-perfusion conical bioreactor
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Source: Biotechnology and Bioengineering - January 10, 2007 Authors: Harmeet Singh, Seng Ang Eng, T. T. Lim, Dietmar W. Hutmacher Source Type: news
Encapsulation of proteins in biodegradable polymeric microparticles using electrospray in the Taylor cone-jet mode
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Source: Biotechnology and Bioengineering - January 10, 2007 Authors: Jingwei Xie, Chi-Hwa Wang Source Type: news
Comparisons of optical pH and dissolved oxygen sensors with traditional electrochemical probes during mammalian cell culture
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Source: Biotechnology and Bioengineering - January 10, 2007 Authors: Michael A. Hanson, Xudong Ge, Yordan Kostov, Kurt A. Brorson, Antonio R. Moreira, Govind Rao Source Type: news
Measurement of 15N relaxation in deuterated amide groups in proteins using direct nitrogen detection.
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Source: Journal of Bimolecular NMR - January 6, 2007 Source Type: news
Processing of ND NMR spectra sampled in polar coordinates: a simple Fourier transform instead of a reconstruction.
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Source: Journal of Bimolecular NMR - January 6, 2007 Source Type: news
Magic-angle spinning solid-state NMR of a 144 kDa membrane protein complex: E. coli cytochrome bo3 oxidase.
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Source: Journal of Bimolecular NMR - January 6, 2007 Source Type: news
Towards unambiguous assignment of methyl-containing residues by double and triple sensitivity-enhanced HCCmHm-TOCSY experiments.
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Source: Journal of Bimolecular NMR - January 6, 2007 Source Type: news
Identification of individual protein-ligand NOEs in the limit of intermediate exchange.
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Source: Journal of Bimolecular NMR - January 6, 2007 Source Type: news
A simple and reliable approach to docking protein-protein complexes from very sparse NOE-derived intermolecular distance restraints.
